GENCODE reference annotation for the human and mouse genomes.

A. Frankish; M. Diekhans; A.M. Ferreira; R. Johnson; I. Jungreis; J. Loveland; J.M. Mudge; C. Sisu; J. Wright; J. Armstrong; I. Barnes; A. Berry; A. Bignell; S. Carbonell Sala; J. Chrast; F. Cunningham; T. Di Domenico; S. Donaldson; I.T. Fiddes; C. García Girón; J.M. Gonzalez; T. Grego; M. Hardy; T. Hourlier; T. Hunt; O.G. Izuogu; J. Lagarde; F.J. Martin; L. Martínez; S. Mohanan; P. Muir; FCP Navarro; A. Parker; B. Pei; F. Pozo; M. Ruffier; B.M. Schmitt; E. Stapleton; M.M. Suner; I. Sycheva; B. Uszczynska-Ratajczak; J. Xu; A. Yates; D. Zerbino; Y. Zhang; B. Aken; J.S. Choudhary; M. Gerstein; R. Guigó; TJP Hubbard; M. Kellis; B. Paten; A. Reymond; M.L. Tress; P. Flicek

GENCODE reference annotation for the human and mouse genomes.

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Auteurs

Date

8 janvier 2019

Type de document

Articles

Périmètre

Publications

Langue

Anglais

Identifiants

doi: 10.1093/nar/gky955
issn: 0305-1048

Source

Serveur académique Lausannois

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Ce document est lié à :
info:eu-repo/semantics/altIdentifier/doi/10.1093/nar/gky955

Ce document est lié à :
info:eu-repo/semantics/altIdentifier/pmid/30357393

Ce document est lié à :
info:eu-repo/semantics/altIdentifier/eissn/1362-4962

Ce document est lié à :
info:eu-repo/semantics/altIdentifier/urn/urn:nbn:ch:serval-BIB_FACD746C7F1B2

Collection

Serveur Académique Lausannois

Organisation

Université de Lausanne et CHUV

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info:eu-repo/semantics/openAccess , CC BY 4.0 , https://creativecommons.org/licenses/by/4.0/

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Animals; Computational Biology; Databases, Genetic; Genome, Human/genetics; Genomics; Humans; Internet; Mice; Molecular Sequence Annotation; Pseudogenes/genetics; Software

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Mouse House mice Mus musculus House mouse Methods of analysis Analysis and chemistry Analytical methods Chemical analysis Analysis methods Analysis and examination

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A. Frankish et al., « GENCODE reference annotation for the human and mouse genomes. », Serveur académique Lausannois, ID : 10.1093/nar/gky955

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The accurate identification and description of the genes in the human and mouse genomes is a fundamental requirement for high quality analysis of data informing both genome biology and clinical genomics. Over the last 15 years, the GENCODE consortium has been producing reference quality gene annotations to provide this foundational resource. The GENCODE consortium includes both experimental and computational biology groups who work together to improve and extend the GENCODE gene annotation. Specifically, we generate primary data, create bioinformatics tools and provide analysis to support the work of expert manual gene annotators and automated gene annotation pipelines. In addition, manual and computational annotation workflows use any and all publicly available data and analysis, along with the research literature to identify and characterise gene loci to the highest standard. GENCODE gene annotations are accessible via the Ensembl and UCSC Genome Browsers, the Ensembl FTP site, Ensembl Biomart, Ensembl Perl and REST APIs as well as https://www.gencodegenes.org.

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GENCODE reference annotation for the human and mouse genomes.

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