Test dataset for assessment FROGS ITS methodology

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Auteur

Olivier Rué

Date

31 mars 2020

Type de document

Jeux de données

Périmètre

Sources de la recherche

Identifiant

doi: 10.15454/AOT7UL

Source

Recherche Data Gouv

Collection

Recherche Data Gouv

Organisation

Ministère de l'enseignement supérieur et de la recherche

Mots-clés Und

Medicine, Health and Life Sciences metabarcoding fungi ITS1 ITS2

Sujets proches En

Funguses Fungus kingdom Fungal kingdom Mycobiota Mycota

Citer ce document

Olivier Rué, « Test dataset for assessment FROGS ITS methodology », Recherche Data Gouv, ID : 10.15454/AOT7UL

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Résumé 0

Our objective was to create datasets allowing, among other things, to test methods and tools to process data from Fungi metabarcoding sequencing. Consequently, we have computer-generated reads of 250 nucleotides in length from artificial PCRs produced with the Grinder software on ITS1 or ITS2 from Fungi (UNITES v7.1), as diverse as possible. These data can be used for software benchmarking.

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