2005
Ce document est lié à :
info:eu-repo/semantics/altIdentifier/doi/10.1093/bioinformatics/bti435
Ce document est lié à :
info:eu-repo/semantics/altIdentifier/pmid/15817689
Ce document est lié à :
info:eu-repo/semantics/altIdentifier/pissn/1367-4803
Ce document est lié à :
info:eu-repo/semantics/altIdentifier/urn/urn:nbn:ch:serval-BIB_B5B5A77547460
info:eu-repo/semantics/openAccess , Copying allowed only for non-profit organizations , https://serval.unil.ch/disclaimer
F. Armand et al., « Rapid and selective surveillance of Arabidopsis thaliana genome annotations with Centrifuge. », Serveur académique Lausannois, ID : 10.1093/bioinformatics/bti435
Centrifuge is a user-friendly system to simultaneously access Arabidopsis gene annotations and intra- and inter-organism sequence comparison data. The tool allows rapid retrieval of user-selected data for each annotated Arabidopsis gene providing, in any combination, data on the following features: predicted protein properties such as mass, pI, cellular location and transmembrane domains; SWISS-PROT annotations; Interpro domains; Gene Ontology records; verified transcription; BLAST matches to the proteomes of A.thaliana, Oryza sativa (rice), Caenorhabditis elegans, Drosophila melanogaster and Homo sapiens. The tool lends itself particularly well to the rapid analysis of contigs or of tens or hundreds of genes identified by high-throughput gene expression experiments. In these cases, a summary table of principal predicted protein features for all genes is given followed by more detailed reports for each individual gene. Centrifuge can also be used for single gene analysis or in a word search mode. AVAILABILITY: http://centrifuge.unil.ch/ CONTACT: edward.farmer@unil.ch.