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25 août 2017
- doi: 10.15454/INYUVZ
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Agricultural Sciences Medicine, Health and Life Sciences transposable_element (SO:0000101) Molecular Sequence AnnotationSujets proches
Statistical data Cases, clinical reports, statistics Stenophragma Statistical data Statistical analysis Statistical methods Statistical science Natural science Sciences Science of science Clinical sciences Medical profession Biosciences Sciences, Life Wellness Personal health Knowledge, Classification of Biography--HealthCiter ce document
Hadi Quesneville, « Transposable element annotation of Arabidopsis lyrata subsp. lyrata », Recherche Data Gouv, ID : 10.15454/INYUVZ
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After running the TEdenovo, we got a filtered library (without the SSR consensus and without the unclassified consensus if they were generated with less than 10 HSPs). We have clustered this library and the cluster number is in the header of each consensus. After a first TEannot on this library, we filtered the consensus having at least one FLC (Full Length Copy). This library is inserted in RepetDB. We have launched a second TEannot on this library, and we have inserted the statistical data of this second annotation. Be careful, this TE library have not been manually curated. It is provided “as is”, i.e. a direct output of the REPET pipeline. Genome annotation files and TE consensus ID mapping between previous and new classification are available for download.