Bioinformatic and statistical scripts to analyze acorn mycobiota structure and composition

Fiche du document

Auteurs
Date

28 juin 2019

Type de document
Périmètre
Langue
Identifiant
Source

Recherche Data Gouv

Collection

Recherche Data Gouv

Organisation

Ministère de l'enseignement supérieur et de la recherche

Mots-clés Und

Agricultural Sciences Earth and Environmental Sciences Medicine, Health and Life Sciences

Sujets proches En

Communities of fungi Communities, Fungal Statistical data Statistical analysis Statistical methods Statistical science

Citer ce document

Tania Fort et al., « Bioinformatic and statistical scripts to analyze acorn mycobiota structure and composition », Recherche Data Gouv, ID : 10.15454/SM6OCR

Métriques

Partage / Export

Résumé 0

This dataset contains R-scripts to perform bioinformatic and statistical analysis on acorn associated fungal communities (Fort et al., Maternal effects and environmental filtering shape seed fungal communities in oak trees. Submitted). Bioinformatic script was applied to raw sequences after paired-end sequences were joined using PEAR v0.9.10 (Zhang et al., 2014). Raw sequences are available at https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA551388. Metadata and ASV tables are also provided allowing to use statistical analysis scripts without running the bioinformatic steps.

document thumbnail

Par les mêmes auteurs

Sur les mêmes sujets

Exporter en