Source code of CulebrONT: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes
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8 mars 2022
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- doi: 10.23708/TBPNWJ
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Computer and Information Science assembly quality control long reads FAIR reproducibility snakemake pipeline python package genomeSujets proches
Tools Work, Method of Industry (Psychology) Method of work Hand tools Handtools WritersCiter ce document
Julie Orjuela et al., « Source code of CulebrONT: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes », DataSuds, ID : 10.23708/TBPNWJ
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CulebrONT is an open-source, scalable, modulable and traceable snakemake pipeline, able to launch multiple assembly tools in parallel and providing help for choosing the best possible assembly. Documentation: https://culebront-pipeline.readthedocs.io/en/2.1.1/ Code development: https://github.com/SouthGreenPlatform/culebrONT The authors acknowledge the IRD i-Trop HPC (South Green Platform) from IRD Montpellier for providing resources that contributed to this work.
