kmer dictionaries and associated scripts for kmer contaminant detection in Drosophila suzukii sequencing data using Clark program
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18 avril 2023
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- doi: 10.57745/HYTIBH
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Mathieu Gautier, « kmer dictionaries and associated scripts for kmer contaminant detection in Drosophila suzukii sequencing data using Clark program », Recherche Data Gouv, ID : 10.57745/HYTIBH
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The compressed archive contains material for performing kmer-based contaminant screening of Drosophila suzukii (or other related Drosophilid species) sequencing data using Clark or Clarkl programs. This includes species discriminating kmer dictionaries (built from cleaned genome assemblies of 29 Drosophila species and 12 common Drosophila commensals or pathogens) and example analysis scripts.