Dataset linked to the publication of McLeod et al. (2023): "Multi-environment association study highlights candidate genes for robust agronomic quantitative trait loci in a novel worldwide Capsicum core collection"

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The dataset contains raw data associated to the publication “ Multi-environment association study highlights candidate genes for robust agronomic QTLs in a novel worldwide Capsicum core collection “, McLeod et al. (2023). It contains two files. G2P-SOL_Pepper_CC_Pheno_data_2023.csv: raw phenotypic data of 350 accessions constituting the worldwide core collection of Capsicum annuum constructed within the European Union’s Horizon 2020 ‘G2P-SOL’ project (Linking genetic resources, genomes, and phenotypes of Solanaceous crops), grown in 6 environment-trials (INRAE, France in 2019 and 2020, CREA, Italy in 2019, ARO, Israel in 2020, BATEM, Türkiye in 2020, WorldVeg, Taiwan in 2020 ), within a complete block design. It contains assessments of 23 phenotypic agronomic traits related to fruit and plant development traits. Accessions are named based on their G2P-SOL code. G2P-SOL_Pepper_CC_Geno_data_2023.gz: genotypic data (VCF) of the 350 accessions constituting the worldwide core collection of Capsicum annuum constructed within the European Union’s Horizon 2020 ‘G2P-SOL’ project (Linking genetic resources, genomes, and phenotypes of Solanaceous crops), characterized for 10,195 SNP/indels-derived markers obtained by Genotyping-by-Sequencing and after filtering to retain bi-allelic SNPs, with a minor allele frequency (MAF) greater than 0.01, a mean read depth greater than 8, less than 30% of missing data and heterozygous for less than 20% of the accessions