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6 juin 2012
- handle: 10670/1.2fohf4
- Boc, A.; Diallo, A. B. et Makarenkov, V. (2012). « T-REX: a web server for inferring, validating and visualizing phylogenetic trees and networks ». Nucleic Acids Research, 40(W1), W573-W579.
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http://archipel.uqam.ca/7927/
Ce document est lié à :
http://dx.doi.org/10.1093/nar/gks485
Ce document est lié à :
doi:10.1093/nar/gks485
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phylogenetic treesSujets proches
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A. Boc et al., « T-REX: a web server for inferring, validating and visualizing phylogenetic trees and networks », UQAM Archipel : articles scientifiques, ID : 10670/1.2fohf4
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T-REX (Tree and reticulogram REConstruction) is a web server dedicated to the reconstruction of phylogenetic trees, reticulation networks and to the inference of horizontal gene transfer (HGT) events. T-REX includes several popular bioinformatics applications such as MUSCLE, MAFFT, Neighbor Joining, NINJA, BioNJ, PhyML, RAxML, random phylogenetic tree generator and some well-known sequence-to-distance transformation models. It also comprises fast and effective methods for inferring phylogenetic trees from complete and incomplete distance matrices as well as for reconstructing reticulograms and HGT networks, including the detection and validation of complete and partial gene transfers, inference of consensus HGT scenarios and interactive HGT identification, developed by the authors. The included methods allows for validating and visualizing phylogenetic trees and networks which can be built from distance or sequence data. The web server is available at: www.trex.uqam.ca.