Expanding the Orthologous Matrix (OMA) programmatic interfaces: REST API and the OmaDB packages for R and Python.
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2019
- doi: 10.12688/f1000research.17548.2
- issn: 2046-1402
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info:eu-repo/semantics/altIdentifier/doi/10.12688/f1000research.17548.2
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info:eu-repo/semantics/altIdentifier/pmid/31001419
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info:eu-repo/semantics/altIdentifier/eissn/2046-1402
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info:eu-repo/semantics/altIdentifier/urn/urn:nbn:ch:serval-BIB_DA9EB01989966
info:eu-repo/semantics/openAccess , CC BY 4.0 , https://creativecommons.org/licenses/by/4.0/
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K. Kaleb et al., « Expanding the Orthologous Matrix (OMA) programmatic interfaces: REST API and the OmaDB packages for R and Python. », Serveur académique Lausannois, ID : 10.12688/f1000research.17548.2
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Résumé
The Orthologous Matrix (OMA) is a well-established resource to identify orthologs among many genomes. Here, we present two recent additions to its programmatic interface, namely a REST API, and user-friendly R and Python packages called OmaDB. These should further facilitate the incorporation of OMA data into computational scripts and pipelines. The REST API can be freely accessed at https://omabrowser.org/api. The R OmaDB package is available as part of Bioconductor at http://bioconductor.org/packages/OmaDB/, and the omadb Python package is available from the Python Package Index (PyPI) at https://pypi.org/project/omadb/.